Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00594.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 339

Length: 565
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32


Found at i:522 original size:16 final size:17

Alignment explanation


    Indices: 501--533  Score: 50
    Period size: 16  Copynumber: 2.0  Consensus size: 17

        491 TCTGTTTTTG

                             
        501 GTAATACGTATG-AGTT
          1 GTAATACGTATGCAGTT

                  *          
        517 GTAATATGTATGCAGTT
          1 GTAATACGTATGCAGTT

        534 TCATTTAAAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.30, C:0.06, G:0.24, T:0.39


Consensus pattern (17 bp):   
GTAATACGTATGCAGTT
Done.