Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01275.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2998
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34


Found at i:2039 original size:31 final size:31

Alignment explanation


    Indices: 2001--2073  Score: 146
    Period size: 31  Copynumber: 2.4  Consensus size: 31

       1991 TGGTCTCTGC

                                           
       2001 TTAATTCAGTTGTCATAATTGAACTAGTTGA
          1 TTAATTCAGTTGTCATAATTGAACTAGTTGA

                                           
       2032 TTAATTCAGTTGTCATAATTGAACTAGTTGA
          1 TTAATTCAGTTGTCATAATTGAACTAGTTGA

                       
       2063 TTAATTCAGTT
          1 TTAATTCAGTT

       2074 TCTTCATAAG


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   42  1.00

ACGTcount: A:0.32, C:0.10, G:0.15, T:0.44


Consensus pattern (31 bp):   
TTAATTCAGTTGTCATAATTGAACTAGTTGA

Done.