Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01278.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 404

Length: 674
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30


Found at i:557 original size:3 final size:3

Alignment explanation


    Indices: 549--580  Score: 55
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        539 GGTTGATATA

                                    *                 
        549 AGT AGT AGT AGT AGT AGT GGT AGT AGT AGT AG
          1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AG

        581 GTGTTTTATG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31


Consensus pattern (3 bp):   
AGT

Done.