Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01280.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4690
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37


Found at i:4515 original size:19 final size:19

Alignment explanation


    Indices: 4491--4528  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       4481 TGTCTAATTA

                               
       4491 GGTTTATGAAATTTGATTT
          1 GGTTTATGAAATTTGATTT

                      *        
       4510 GGTTTATGAATTTTGATTT
          1 GGTTTATGAAATTTGATTT

       4529 AGGATTAGAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55


Consensus pattern (19 bp):   
GGTTTATGAAATTTGATTT
Done.