Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00597.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 590

Length: 984
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33


Found at i:367 original size:20 final size:22

Alignment explanation


    Indices: 327--371  Score: 65
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        317 CTTTTTTAAA

                                  
        327 ATCGATAAAAAAATAAAAAAGG
          1 ATCGATAAAAAAATAAAAAAGG

                         *         
        349 ATCGA-AAAAAAAGAAAAAGAGG
          1 ATCGATAAAAAAATAAAAA-AGG

             
        371 A
          1 A

        372 GAAAACGAGA


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  21   12  0.57
  22    9  0.43

ACGTcount: A:0.69, C:0.04, G:0.18, T:0.09


Consensus pattern (22 bp):   
ATCGATAAAAAAATAAAAAAGG

Found at i:375 original size:20 final size:20

Alignment explanation


    Indices: 333--376  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 20

        323 TAAAATCGAT

                   *             
        333 AAAAAAATAAAAAAGGATCGA
          1 AAAAAAAGAAAAAAGGA-CGA

                                 
        354 AAAAAAAGAAAAAGAGGA-GA
          1 AAAAAAAGAAAAA-AGGACGA

               
        374 AAA
          1 AAA

        377 CGAGATTCTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  20    5  0.24
  21   12  0.57
  22    4  0.19

ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05


Consensus pattern (20 bp):   
AAAAAAAGAAAAAAGGACGA
Done.