Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01289.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 593

Length: 989
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39


Found at i:915 original size:64 final size:64

Alignment explanation


    Indices: 811--936  Score: 207
    Period size: 64  Copynumber: 2.0  Consensus size: 64

        801 CTTAGGAATC

                          *                    *             *       *      
        811 CTTTTTAAGGAGTGGAAATAATTTATATTATCAATGTAGTATGAAAGGTTATTGGTCGTGTAAA
          1 CTTTTTAAGGAGTGAAAATAATTTATATTATCAATATAGTATGAAAGGTCATTGGTCATGTAAA

                                      *                                   
        875 CTTTTTAAGGAGTGAAAATAATTTATGTTATCAATATAGTATGAAAGGTCATTGGTCATGTA
          1 CTTTTTAAGGAGTGAAAATAATTTATATTATCAATATAGTATGAAAGGTCATTGGTCATGTA

        937 TCTATTATAC


Statistics
Matches: 57,  Mismatches: 5, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  64   57  1.00

ACGTcount: A:0.35, C:0.06, G:0.21, T:0.39


Consensus pattern (64 bp):   
CTTTTTAAGGAGTGAAAATAATTTATATTATCAATATAGTATGAAAGGTCATTGGTCATGTAAA
Done.