Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01298.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 574

Length: 958
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29


Found at i:549 original size:90 final size:90

Alignment explanation


    Indices: 396--574  Score: 349
    Period size: 90  Copynumber: 2.0  Consensus size: 90

        386 TCTGTGGTTT

                                                                             
        396 GCCATTAACCAAAACCTTGGATATTAGAGGCTTATCCAGACTAACATACACAACCATGCGGGCAA
          1 GCCATTAACCAAAACCTTGGATATTAGAGGCTTATCCAGACTAACATACACAACCATGCGGGCAA

                                     
        461 AACGCCATCTTGTCCAACTGTCGGA
         66 AACGCCATCTTGTCCAACTGTCGGA

                                                                             
        486 GCCATTAACCAAAACCTTGGATATTAGAGGCTTATCCAGACTAACATACACAACCATGCGGGCAA
          1 GCCATTAACCAAAACCTTGGATATTAGAGGCTTATCCAGACTAACATACACAACCATGCGGGCAA

                  *                 
        551 AACGCCCTCTTGTCCAACTGTCGG
         66 AACGCCATCTTGTCCAACTGTCGG

        575 TGTTCAGATC


Statistics
Matches: 88,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  90   88  1.00

ACGTcount: A:0.32, C:0.28, G:0.18, T:0.21


Consensus pattern (90 bp):   
GCCATTAACCAAAACCTTGGATATTAGAGGCTTATCCAGACTAACATACACAACCATGCGGGCAA
AACGCCATCTTGTCCAACTGTCGGA
Done.