Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01317.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2673
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:1010 original size:2 final size:2

Alignment explanation


    Indices: 1003--1034  Score: 50
    Period size: 2  Copynumber: 17.0  Consensus size: 2

        993 GCTCTTACAC

                                                              
       1003 AT AT AT AT -T AT -T AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       1035 GTTGAATAGA


Statistics
Matches: 28,  Mismatches: 0, Indels: 4
        0.88            0.00        0.12

Matches are distributed among these distances:
   1    2  0.07
   2   26  0.93

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (2 bp):   
AT

Done.