Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01340.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3239
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28


Found at i:60 original size:6 final size:6

Alignment explanation


    Indices: 35--77  Score: 59
    Period size: 6  Copynumber: 6.8  Consensus size: 6

         25 TTTCTCCATC

                          *                                  
         35 TCTTCA CTCTATCT TCTTCA TCTTCA TCTTCA TCTTCA TCTTC
          1 TCTTCA -TCT-TCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTC

         78 TTCTCCTTTA


Statistics
Matches: 33,  Mismatches: 2, Indels: 3
        0.87            0.05        0.08

Matches are distributed among these distances:
   6   25  0.76
   7    6  0.18
   8    2  0.06

ACGTcount: A:0.14, C:0.35, G:0.00, T:0.51


Consensus pattern (6 bp):   
TCTTCA

Found at i:65 original size:15 final size:15

Alignment explanation


    Indices: 45--110  Score: 59
    Period size: 15  Copynumber: 4.6  Consensus size: 15

         35 TCTTCACTCT

                           
         45 ATCTTCTTCATCTTC
          1 ATCTTCTTCATCTTC

                           
         60 A---TCTTCATCTTC
          1 ATCTTCTTCATCTTC

                           *
         72 ATCTTCTTC-TCCTTT
          1 ATCTTCTTCAT-CTTC

                   *  *    
         87 ATCTTCTGCAACTTC
          1 ATCTTCTTCATCTTC

                *    
        102 ATCTCCTTC
          1 ATCTTCTTC

        111 GTATGTCACT


Statistics
Matches: 40,  Mismatches: 6, Indels: 10
        0.71            0.11        0.18

Matches are distributed among these distances:
  12   12  0.30
  14    1  0.03
  15   27  0.68

ACGTcount: A:0.14, C:0.35, G:0.02, T:0.50


Consensus pattern (15 bp):   
ATCTTCTTCATCTTC

Done.