Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01355.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3311
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31


Found at i:119 original size:6 final size:6

Alignment explanation


    Indices: 108--147  Score: 80
    Period size: 6  Copynumber: 6.7  Consensus size: 6

         98 TTTTGCTCTT

                                                          
        108 CCTTTC CCTTTC CCTTTC CCTTTC CCTTTC CCTTTC CCTT
          1 CCTTTC CCTTTC CCTTTC CCTTTC CCTTTC CCTTTC CCTT

        148 CATCTCATCT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (6 bp):   
CCTTTC

Done.