Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01363.P10

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2468
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:2399 original size:36 final size:36

Alignment explanation


    Indices: 2352--2421  Score: 140
    Period size: 36  Copynumber: 1.9  Consensus size: 36

       2342 TAAGAGTCTG

                                                
       2352 CTATTATCTTCTAAGTTGTCAACATTTCGAATTGAA
          1 CTATTATCTTCTAAGTTGTCAACATTTCGAATTGAA

                                              
       2388 CTATTATCTTCTAAGTTGTCAACATTTCGAATTG
          1 CTATTATCTTCTAAGTTGTCAACATTTCGAATTG

       2422 TTTCTCCTCT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   34  1.00

ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43


Consensus pattern (36 bp):   
CTATTATCTTCTAAGTTGTCAACATTTCGAATTGAA
Done.