Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01363.P18

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3988
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33


Found at i:740 original size:3 final size:3

Alignment explanation


    Indices: 734--782  Score: 98
    Period size: 3  Copynumber: 16.3  Consensus size: 3

        724 ACTTTTTATT

                                                                           
        734 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA

             
        782 A
          1 A

        783 AACTTTAAAA


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   46  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
ATA

Found at i:3919 original size:36 final size:36

Alignment explanation


    Indices: 3872--3941  Score: 140
    Period size: 36  Copynumber: 1.9  Consensus size: 36

       3862 TAAGAGTCTG

                                                
       3872 CTATTATCTTCTAAGTTGTCAACATTTCGAATTGAA
          1 CTATTATCTTCTAAGTTGTCAACATTTCGAATTGAA

                                              
       3908 CTATTATCTTCTAAGTTGTCAACATTTCGAATTG
          1 CTATTATCTTCTAAGTTGTCAACATTTCGAATTG

       3942 TTTCTCCTCT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   34  1.00

ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43


Consensus pattern (36 bp):   
CTATTATCTTCTAAGTTGTCAACATTTCGAATTGAA
Done.