Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01369.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3096
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36


Found at i:1496 original size:21 final size:20

Alignment explanation


    Indices: 1470--1513  Score: 63
    Period size: 21  Copynumber: 2.1  Consensus size: 20

       1460 TAAAGCCTTA

                                  
       1470 TTTTGGATTAT-GGTTTGAGGT
          1 TTTTGGATT-TGGGTTTG-GGT

                                
       1491 TTTTGGATTTGGGTTTGGGT
          1 TTTTGGATTTGGGTTTGGGT

               
       1511 TTT
          1 TTT

       1514 ATGCATGCAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  20    7  0.32
  21   15  0.68

ACGTcount: A:0.09, C:0.00, G:0.34, T:0.57


Consensus pattern (20 bp):   
TTTTGGATTTGGGTTTGGGT
Done.