Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01371.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3297
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34


Found at i:1230 original size:25 final size:25

Alignment explanation


    Indices: 1202--1249  Score: 96
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       1192 ATATATTGTT

                                     
       1202 CCTATCATAGATTTCTAAGTTCTTG
          1 CCTATCATAGATTTCTAAGTTCTTG

                                   
       1227 CCTATCATAGATTTCTAAGTTCT
          1 CCTATCATAGATTTCTAAGTTCT

       1250 AGCTATATAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   23  1.00

ACGTcount: A:0.25, C:0.21, G:0.10, T:0.44


Consensus pattern (25 bp):   
CCTATCATAGATTTCTAAGTTCTTG
Done.