Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01378.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2040
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32


Found at i:288 original size:19 final size:18

Alignment explanation


    Indices: 260--295  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

        250 AAGTTACCTT

                              
        260 CTTTGTTTCTGGTTTTGA
          1 CTTTGTTTCTGGTTTTGA

                        *     
        278 CTTTGGTTTCTGTTTTTG
          1 CTTT-GTTTCTGGTTTTG

        296 TTTGTGGGTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    4  0.25
  19   12  0.75

ACGTcount: A:0.03, C:0.11, G:0.22, T:0.64


Consensus pattern (18 bp):   
CTTTGTTTCTGGTTTTGA
Done.