Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01384.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2015
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36


Found at i:117 original size:27 final size:27

Alignment explanation


    Indices: 47--118  Score: 67
    Period size: 27  Copynumber: 2.7  Consensus size: 27

         37 CTTTCTTTTC

                                 *     
         47 TCTCTCTCCTCTCTCTTTCTTTCACTT
          1 TCTCTCTCCTCTCTCTTTCTTCCACTT

                 *  *  *            *    
         74 TCTCTGTCATAGT-TCTTT-TTCCTCTTT
          1 TCTCTCTCCT-CTCTCTTTCTTCCAC-TT

                              
        101 TCTCTCTCCTCTCTCTTT
          1 TCTCTCTCCTCTCTCTTT

        119 GCTCACAGGT


Statistics
Matches: 34,  Mismatches: 8, Indels: 6
        0.71            0.17        0.12

Matches are distributed among these distances:
  26    5  0.15
  27   28  0.82
  28    1  0.03

ACGTcount: A:0.04, C:0.36, G:0.03, T:0.57


Consensus pattern (27 bp):   
TCTCTCTCCTCTCTCTTTCTTCCACTT
Done.