Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01394.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 975

Length: 1625
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:1585 original size:26 final size:26

Alignment explanation


    Indices: 1549--1599  Score: 93
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1539 GAACTTGTAA

                 *                    
       1549 ATTGTGAGATATATTTATTTATATGG
          1 ATTGTAAGATATATTTATTTATATGG

                                     
       1575 ATTGTAAGATATATTTATTTATATG
          1 ATTGTAAGATATATTTATTTATATG

       1600 ACTTGCCAAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   24  1.00

ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51


Consensus pattern (26 bp):   
ATTGTAAGATATATTTATTTATATGG
Done.