Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01398.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2212
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.31


Found at i:1985 original size:24 final size:24

Alignment explanation


    Indices: 1958--2004  Score: 85
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1948 TTATAGTTTA

                                    
       1958 TAGAAATGTATAAATAAGATGTAT
          1 TAGAAATGTATAAATAAGATGTAT

                     *             
       1982 TAGAAATGTGTAAATAAGATGTA
          1 TAGAAATGTATAAATAAGATGTA

       2005 GTTATGGTTT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.49, C:0.00, G:0.19, T:0.32


Consensus pattern (24 bp):   
TAGAAATGTATAAATAAGATGTAT
Done.