Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00615.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1035
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30


Found at i:96 original size:23 final size:24

Alignment explanation


    Indices: 65--110  Score: 76
    Period size: 23  Copynumber: 2.0  Consensus size: 24

         55 GCTTCCATCT

                      *             
         65 CTTCATCTCCTTTCCTCCCCTTCC
          1 CTTCATCTCCCTTCCTCCCCTTCC

                                   
         89 CTTC-TCTCCCTTCCTCCCCTTC
          1 CTTCATCTCCCTTCCTCCCCTTC

        111 ACAACCCATC


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  23   17  0.81
  24    4  0.19

ACGTcount: A:0.02, C:0.57, G:0.00, T:0.41


Consensus pattern (24 bp):   
CTTCATCTCCCTTCCTCCCCTTCC
Done.