Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01410.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 423

Length: 706
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30


Found at i:44 original size:22 final size:22

Alignment explanation


    Indices: 19--80  Score: 70
    Period size: 25  Copynumber: 2.7  Consensus size: 22

          9 TTTCCCCAAA

                               *  
         19 TCGGTAGCCCTCTGCATCTTCG
          1 TCGGTAGCCCTCTGCATCTCCG

                * *                  
         41 TCGGCAACCCATTGCTGCATCTCCG
          1 TCGGTAGCCC--T-CTGCATCTCCG

                           
         66 TCGGTAGCCCTCTGC
          1 TCGGTAGCCCTCTGC

         81 TGCTTCTCCT


Statistics
Matches: 32,  Mismatches: 5, Indels: 6
        0.74            0.12        0.14

Matches are distributed among these distances:
  22   12  0.38
  23    1  0.03
  24    1  0.03
  25   18  0.56

ACGTcount: A:0.11, C:0.39, G:0.23, T:0.27


Consensus pattern (22 bp):   
TCGGTAGCCCTCTGCATCTCCG

Found at i:81 original size:25 final size:25

Alignment explanation


    Indices: 19--89  Score: 69
    Period size: 25  Copynumber: 3.0  Consensus size: 25

          9 TTTCCCCAAA

                                  *  
         19 TCGGTAG-CC-CT-CTGCATCTTCG
          1 TCGGTAGCCCTCTGCTGCATCTCCG

                * *                   
         41 TCGGCAACCCAT-TGCTGCATCTCCG
          1 TCGGTAGCCC-TCTGCTGCATCTCCG

                              *     
         66 TCGGTAGCCCTCTGCTGCTTCTCC
          1 TCGGTAGCCCTCTGCTGCATCTCC

         90 TTGAGAAAAC


Statistics
Matches: 38,  Mismatches: 6, Indels: 7
        0.75            0.12        0.14

Matches are distributed among these distances:
  22    5  0.13
  23    2  0.05
  24    2  0.05
  25   29  0.76

ACGTcount: A:0.10, C:0.39, G:0.21, T:0.30


Consensus pattern (25 bp):   
TCGGTAGCCCTCTGCTGCATCTCCG
Done.