Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01427.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2878
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32


Found at i:2712 original size:17 final size:18

Alignment explanation


    Indices: 2676--2713  Score: 51
    Period size: 20  Copynumber: 2.1  Consensus size: 18

       2666 CCACATATGT

                                
       2676 AATCTATTTTCATGTAAAAA
          1 AATCTATTTTCA--TAAAAA

                              
       2696 AATCTATTTTC-TAAAAA
          1 AATCTATTTTCATAAAAA

             
       2713 A
          1 A

       2714 GTTATTCTAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  17    7  0.39
  20   11  0.61

ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39


Consensus pattern (18 bp):   
AATCTATTTTCATAAAAA
Done.