Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01441.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2535
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.38


Found at i:1694 original size:92 final size:93

Alignment explanation


    Indices: 1551--1735  Score: 309
    Period size: 92  Copynumber: 2.0  Consensus size: 93

       1541 AGCAATCCTT

                                  *          *           *                   
       1551 TTCTTAGCCTTTATTTACTTTTGTTAGGATTGAGCTCTGATTAGATATTTTGTTTTGGATTTAAT
          1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGATTTAAT

                                        
       1616 TGTTGATTCATCTTTTTTCTATTATTTC
         66 TGTTGATTCATCTTTTTTCTATTATTTC

                 *                                                    *      
       1644 TTCTTCGCCTTTATTTAC-TTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
          1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGATTTAAT

                *                       
       1708 TGTTTATTCATCTTTTTTCTATTATTTC
         66 TGTTGATTCATCTTTTTTCTATTATTTC

       1736 CTGGCAGCTC


Statistics
Matches: 86,  Mismatches: 6, Indels: 1
        0.92            0.06        0.01

Matches are distributed among these distances:
  92   69  0.80
  93   17  0.20

ACGTcount: A:0.18, C:0.11, G:0.14, T:0.57


Consensus pattern (93 bp):   
TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGATTTAAT
TGTTGATTCATCTTTTTTCTATTATTTC
Done.