Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01475.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6189
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:5635 original size:108 final size:108

Alignment explanation


    Indices: 5446--5658  Score: 336
    Period size: 108  Copynumber: 2.0  Consensus size: 108

       5436 TGGTGTTATA

                                 *                                           
       5446 TCAGGTTTGGAGTTCTAAACTGGTCATAGGCTGCTAATGGTCCTTGACTGCTGATAGTCTTGAAA
          1 TCAGGTTTGGAGTTCTAAACTAGTCATAGGCTGCTAATGGTCCTTGACTGCTGATAGTCTTGAAA

                    *                                  
       5511 TCTCTTACGAGGTGATCTTTGTGGAAGGTTGCTTTGGCCAATG
         66 TCTCTTACAAGGTGATCTTTGTGGAAGGTTGCTTTGGCCAATG

                                     * *  *  * *          **    *            
       5554 TCAGGTTTGGAGTTCTAAACTAGTCCTTGGTTGTTGATGGTCCTTGGTTGCTTATAGTCTTGAAA
          1 TCAGGTTTGGAGTTCTAAACTAGTCATAGGCTGCTAATGGTCCTTGACTGCTGATAGTCTTGAAA

                                                    
       5619 TCTCTTACAAGGTGATCTTTGTGGAAGGTTGCTTTGGCCA
         66 TCTCTTACAAGGTGATCTTTGTGGAAGGTTGCTTTGGCCA

       5659 GATGCTAATA


Statistics
Matches: 95,  Mismatches: 10, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
 108   95  1.00

ACGTcount: A:0.19, C:0.16, G:0.27, T:0.38


Consensus pattern (108 bp):   
TCAGGTTTGGAGTTCTAAACTAGTCATAGGCTGCTAATGGTCCTTGACTGCTGATAGTCTTGAAA
TCTCTTACAAGGTGATCTTTGTGGAAGGTTGCTTTGGCCAATG

Done.