Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01476.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3598
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35


Found at i:1177 original size:39 final size:39

Alignment explanation


    Indices: 1123--1201  Score: 149
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       1113 TGGGACTTGA

                                         *         
       1123 GATTTTCTGATTCTGGTGCTCTTTATGATGTTGGATTAG
          1 GATTTTCTGATTCTGGTGCTCTTTATGATCTTGGATTAG

                                                   
       1162 GATTTTCTGATTCTGGTGCTCTTTATGATCTTGGATTAG
          1 GATTTTCTGATTCTGGTGCTCTTTATGATCTTGGATTAG

             
       1201 G
          1 G

       1202 CAGATGTTCT


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  39   39  1.00

ACGTcount: A:0.15, C:0.11, G:0.25, T:0.48


Consensus pattern (39 bp):   
GATTTTCTGATTCTGGTGCTCTTTATGATCTTGGATTAG

Found at i:2543 original size:6 final size:6

Alignment explanation


    Indices: 2532--2570  Score: 64
    Period size: 6  Copynumber: 6.8  Consensus size: 6

       2522 TGTTCTAACC

                                                           
       2532 TTTTT- TTTTT- TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
          1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTT

       2571 ATTTCATATC


Statistics
Matches: 33,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   5   10  0.30
   6   23  0.70

ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90


Consensus pattern (6 bp):   
TTTTTG

Done.