Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01478.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 495

Length: 826
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36


Found at i:527 original size:12 final size:12

Alignment explanation


    Indices: 507--554  Score: 60
    Period size: 12  Copynumber: 3.8  Consensus size: 12

        497 CCGTACGAAG

                *       
        507 GTGCAAGGAGAC
          1 GTGCGAGGAGAC

                        
        519 GTGCGAGGAGAC
          1 GTGCGAGGAGAC

                        * 
        531 GTGCGAAGGAGGCC
          1 GTGCG-AGGA-GAC

                      
        545 GTGCGAGGAG
          1 GTGCGAGGAG

        555 CCACTCGTGG


Statistics
Matches: 32,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
  12   17  0.53
  13    8  0.25
  14    7  0.22

ACGTcount: A:0.25, C:0.17, G:0.50, T:0.08


Consensus pattern (12 bp):   
GTGCGAGGAGAC

Done.