Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01478.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 352

Length: 587
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35


Found at i:288 original size:12 final size:12

Alignment explanation


    Indices: 268--315  Score: 60
    Period size: 12  Copynumber: 3.8  Consensus size: 12

        258 CCGTACGAAG

                *       
        268 GTGCAAGGAGAC
          1 GTGCGAGGAGAC

                        
        280 GTGCGAGGAGAC
          1 GTGCGAGGAGAC

                        * 
        292 GTGCGAAGGAGGCC
          1 GTGCG-AGGA-GAC

                      
        306 GTGCGAGGAG
          1 GTGCGAGGAG

        316 CCACTCGTGG


Statistics
Matches: 32,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
  12   17  0.53
  13    8  0.25
  14    7  0.22

ACGTcount: A:0.25, C:0.17, G:0.50, T:0.08


Consensus pattern (12 bp):   
GTGCGAGGAGAC

Done.