Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01484.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3345
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39


Found at i:1511 original size:81 final size:81

Alignment explanation


    Indices: 1414--1564  Score: 198
    Period size: 81  Copynumber: 1.9  Consensus size: 81

       1404 TACCTTTTTG

                   *   *               *        *       *    *               
       1414 AATTTGTGATAGATTTTCAGTGGG-AATTTATTG-ATATTCTTTGTCACTTACTTGTGTATCTTG
          1 AATTTGTAATAAATTTTCAGTGGGAAAATT-TTGCAGA-TCTTTATCACATACTTGTGTATCTTG

                              
       1477 GCTGTTGGTACATTGTTT
         64 GCTGTTGGTACATTGTTT

                                                  *          *               
       1495 AATTTGTAATAAATTTTCAGTGGGAAAATTTTGCAGATGTTTATCACATGCTTGTGTATCTTGGC
          1 AATTTGTAATAAATTTTCAGTGGGAAAATTTTGCAGATCTTTATCACATACTTGTGTATCTTGGC

                 
       1560 TGTTG
         66 TGTTG

       1565 ACTTCAGAAT


Statistics
Matches: 60,  Mismatches: 8, Indels: 4
        0.83            0.11        0.06

Matches are distributed among these distances:
  81   54  0.90
  82    6  0.10

ACGTcount: A:0.23, C:0.10, G:0.21, T:0.46


Consensus pattern (81 bp):   
AATTTGTAATAAATTTTCAGTGGGAAAATTTTGCAGATCTTTATCACATACTTGTGTATCTTGGC
TGTTGGTACATTGTTT
Done.