Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01491.M4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7257
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34


Found at i:1219 original size:24 final size:24

Alignment explanation


    Indices: 1187--1257  Score: 79
    Period size: 24  Copynumber: 3.0  Consensus size: 24

       1177 GGGTAATTGT

                *    *              
       1187 GCTGCCATGGCTACTTCTTCCAGC
          1 GCTGACATGACTACTTCTTCCAGC

                        *          *
       1211 GCTGACATGACTGCTTCTTCCAGT
          1 GCTGACATGACTACTTCTTCCAGC

                    *   **         
       1235 GCTGACATAACTGTTTCTTCCAG
          1 GCTGACATGACTACTTCTTCCAG

       1258 ATGAGTAGCC


Statistics
Matches: 41,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  24   41  1.00

ACGTcount: A:0.17, C:0.31, G:0.20, T:0.32


Consensus pattern (24 bp):   
GCTGACATGACTACTTCTTCCAGC

Found at i:4794 original size:46 final size:46

Alignment explanation


    Indices: 4741--4833  Score: 186
    Period size: 46  Copynumber: 2.0  Consensus size: 46

       4731 CAGTGTTTCT

                                                          
       4741 TCCATAGTTTTCTATACTTGTATGGACTATAGACTCGTTGTATGTA
          1 TCCATAGTTTTCTATACTTGTATGGACTATAGACTCGTTGTATGTA

                                                          
       4787 TCCATAGTTTTCTATACTTGTATGGACTATAGACTCGTTGTATGTA
          1 TCCATAGTTTTCTATACTTGTATGGACTATAGACTCGTTGTATGTA

             
       4833 T
          1 T

       4834 GTTATTGCAG


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   47  1.00

ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44


Consensus pattern (46 bp):   
TCCATAGTTTTCTATACTTGTATGGACTATAGACTCGTTGTATGTA
Done.