Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00626.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 869

Length: 1449
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--51  Score: 52
    Period size: 2  Copynumber: 26.5  Consensus size: 2

                         *       *                                      * 
          1 AG AG AG AG AT AG AG GG A- AG AG AG AG AG AG AG AG AG AG -G GG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

               *            
         41 AG GG AG AG AG A
          1 AG AG AG AG AG A

         52 TGGTGGGCTC


Statistics
Matches: 40,  Mismatches: 7, Indels: 4
        0.78            0.14        0.08

Matches are distributed among these distances:
   1    2  0.05
   2   38  0.95

ACGTcount: A:0.45, C:0.00, G:0.53, T:0.02


Consensus pattern (2 bp):   
AG

Found at i:31 original size:23 final size:23

Alignment explanation


    Indices: 1--51  Score: 75
    Period size: 23  Copynumber: 2.2  Consensus size: 23

                     *             
          1 AGAGAGAGATAGAGGGAAGAGAG
          1 AGAGAGAGAGAGAGGGAAGAGAG

                            *  *   
         24 AGAGAGAGAGAGAGGGGAGGGAG
          1 AGAGAGAGAGAGAGGGAAGAGAG

                 
         47 AGAGA
          1 AGAGA

         52 TGGTGGGCTC


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  23   25  1.00

ACGTcount: A:0.45, C:0.00, G:0.53, T:0.02


Consensus pattern (23 bp):   
AGAGAGAGAGAGAGGGAAGAGAG
Done.