Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01506.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4379
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:673 original size:19 final size:20

Alignment explanation


    Indices: 636--676  Score: 59
    Period size: 20  Copynumber: 2.1  Consensus size: 20

        626 TTTTGTACGC

                                
        636 TTTTCCTTTTTCTGAATGAT
          1 TTTTCCTTTTTCTGAATGAT

                                 
        656 TTTTCCTGTTTT-TG-ATGAT
          1 TTTTCCT-TTTTCTGAATGAT

              
        675 TT
          1 TT

        677 GTTTGTATGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  19    7  0.35
  20    9  0.45
  21    4  0.20

ACGTcount: A:0.12, C:0.12, G:0.12, T:0.63


Consensus pattern (20 bp):   
TTTTCCTTTTTCTGAATGAT
Done.