Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01514.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1762
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29


Found at i:1428 original size:242 final size:242

Alignment explanation


    Indices: 1003--1729  Score: 1454
    Period size: 242  Copynumber: 3.0  Consensus size: 242

        993 TTCAATGCAT

                                                                             
       1003 TGGATCTCGGAGGCACATAGAAACTCATGGCACGTTCTCCTTGATGCGACCCCGTTGGTTTTCAG
          1 TGGATCTCGGAGGCACATAGAAACTCATGGCACGTTCTCCTTGATGCGACCCCGTTGGTTTTCAG

                                                                             
       1068 CGAGGGCCAGCGGCTGCCACTCGCACTCCACCAACCGGACTTTGTGTTATGTACAGTTGATAACA
         66 CGAGGGCCAGCGGCTGCCACTCGCACTCCACCAACCGGACTTTGTGTTATGTACAGTTGATAACA

                                                                             
       1133 CCCACGCTCACCCTTCCAAGATTACCTGCCTGCTTGTTAGGAAAAGATCATTTGATACCACCTCT
        131 CCCACGCTCACCCTTCCAAGATTACCTGCCTGCTTGTTAGGAAAAGATCATTTGATACCACCTCT

                                                           
       1198 TCTTCTCCCTAGATTTGCATTTTCTTCAAGCCTTGTTTCAGTTCACA
        196 TCTTCTCCCTAGATTTGCATTTTCTTCAAGCCTTGTTTCAGTTCACA

                                                                             
       1245 TGGATCTCGGAGGCACATAGAAACTCATGGCACGTTCTCCTTGATGCGACCCCGTTGGTTTTCAG
          1 TGGATCTCGGAGGCACATAGAAACTCATGGCACGTTCTCCTTGATGCGACCCCGTTGGTTTTCAG

                                                                             
       1310 CGAGGGCCAGCGGCTGCCACTCGCACTCCACCAACCGGACTTTGTGTTATGTACAGTTGATAACA
         66 CGAGGGCCAGCGGCTGCCACTCGCACTCCACCAACCGGACTTTGTGTTATGTACAGTTGATAACA

                                                                             
       1375 CCCACGCTCACCCTTCCAAGATTACCTGCCTGCTTGTTAGGAAAAGATCATTTGATACCACCTCT
        131 CCCACGCTCACCCTTCCAAGATTACCTGCCTGCTTGTTAGGAAAAGATCATTTGATACCACCTCT

                                                           
       1440 TCTTCTCCCTAGATTTGCATTTTCTTCAAGCCTTGTTTCAGTTCACA
        196 TCTTCTCCCTAGATTTGCATTTTCTTCAAGCCTTGTTTCAGTTCACA

                                                                             
       1487 TGGATCTCGGAGGCACATAGAAACTCATGGCACGTTCTCCTTGATGCGACCCCGTTGGTTTTCAG
          1 TGGATCTCGGAGGCACATAGAAACTCATGGCACGTTCTCCTTGATGCGACCCCGTTGGTTTTCAG

                                                                             
       1552 CGAGGGCCAGCGGCTGCCACTCGCACTCCACCAACCGGACTTTGTGTTATGTACAGTTGATAACA
         66 CGAGGGCCAGCGGCTGCCACTCGCACTCCACCAACCGGACTTTGTGTTATGTACAGTTGATAACA

                                                                             
       1617 CCCACGCTCACCCTTCCAAGATTACCTGCCTGCTTGTTAGGAAAAGATCATTTGATACCACCTCT
        131 CCCACGCTCACCCTTCCAAGATTACCTGCCTGCTTGTTAGGAAAAGATCATTTGATACCACCTCT

                                                           
       1682 TCTTCTCCCTAGATTTGCATTTTCTTCAAGCCTTGTTTCAGTTCACA
        196 TCTTCTCCCTAGATTTGCATTTTCTTCAAGCCTTGTTTCAGTTCACA

             
       1729 T
          1 T

       1730 TGCAGTAAAG


Statistics
Matches: 485,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 242  485  1.00

ACGTcount: A:0.21, C:0.30, G:0.19, T:0.29


Consensus pattern (242 bp):   
TGGATCTCGGAGGCACATAGAAACTCATGGCACGTTCTCCTTGATGCGACCCCGTTGGTTTTCAG
CGAGGGCCAGCGGCTGCCACTCGCACTCCACCAACCGGACTTTGTGTTATGTACAGTTGATAACA
CCCACGCTCACCCTTCCAAGATTACCTGCCTGCTTGTTAGGAAAAGATCATTTGATACCACCTCT
TCTTCTCCCTAGATTTGCATTTTCTTCAAGCCTTGTTTCAGTTCACA
Done.