Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01522.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2179
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24


Found at i:1973 original size:35 final size:35

Alignment explanation


    Indices: 1934--2004  Score: 142
    Period size: 35  Copynumber: 2.0  Consensus size: 35

       1924 AAACCATGAG

                                               
       1934 AGATCCATTCTGATCTAATGCACAAGTAACCGGAA
          1 AGATCCATTCTGATCTAATGCACAAGTAACCGGAA

                                               
       1969 AGATCCATTCTGATCTAATGCACAAGTAACCGGAA
          1 AGATCCATTCTGATCTAATGCACAAGTAACCGGAA

             
       2004 A
          1 A

       2005 AGCTTATTGT


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   36  1.00

ACGTcount: A:0.38, C:0.23, G:0.17, T:0.23


Consensus pattern (35 bp):   
AGATCCATTCTGATCTAATGCACAAGTAACCGGAA
Done.