Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01535.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3602
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41


Found at i:3503 original size:12 final size:12

Alignment explanation


    Indices: 3486--3512  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       3476 ACAATAATTA

                        
       3486 TTGGGTATTGTT
          1 TTGGGTATTGTT

                        
       3498 TTGGGTATTGTT
          1 TTGGGTATTGTT

               
       3510 TTG
          1 TTG

       3513 CATAAATCTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.07, C:0.00, G:0.33, T:0.59


Consensus pattern (12 bp):   
TTGGGTATTGTT
Done.