Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01538.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9086
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.36


Found at i:6683 original size:19 final size:21

Alignment explanation


    Indices: 6653--6692  Score: 66
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       6643 TTTATTTATA

                                 
       6653 AAATTATTATTTTA-ATAAAT
          1 AAATTATTATTTTAGATAAAT

                                 
       6673 AAATT-TTATTTTAGATAAAT
          1 AAATTATTATTTTAGATAAAT

       6693 GAGAAATAAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  19    8  0.42
  20   11  0.58

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (21 bp):   
AAATTATTATTTTAGATAAAT
Done.