Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00633.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 227

Length: 379
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31


Found at i:206 original size:24 final size:25

Alignment explanation


    Indices: 179--235  Score: 75
    Period size: 24  Copynumber: 2.4  Consensus size: 25

        169 GAAGGATGAC

                                    * 
        179 AAGGCTGAGACAAA-A-AAGGAAGTG
          1 AAGGCTGAGA-AAAGAGAAGGAAGCG

                                     
        203 AAGGCTGA-AAAAGAGAAGGAAGCG
          1 AAGGCTGAGAAAAGAGAAGGAAGCG

                     
        227 AAGGCTGAG
          1 AAGGCTGAG

        236 TGAAAATGAT


Statistics
Matches: 29,  Mismatches: 1, Indels: 5
        0.83            0.03        0.14

Matches are distributed among these distances:
  22    3  0.10
  23    2  0.07
  24   24  0.83

ACGTcount: A:0.47, C:0.09, G:0.37, T:0.07


Consensus pattern (25 bp):   
AAGGCTGAGAAAAGAGAAGGAAGCG
Done.