Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01553.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3295
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:599 original size:29 final size:29

Alignment explanation


    Indices: 557--614  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        547 TTTGCACCAC

                                         
        557 ATATTACGTGGAATGCTCGATCAGCATTT
          1 ATATTACGTGGAATGCTCGATCAGCATTT

                                         
        586 ATATTACGTGGAATGCTCGATCAGCATTT
          1 ATATTACGTGGAATGCTCGATCAGCATTT

        615 TCTGAGAGAA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34


Consensus pattern (29 bp):   
ATATTACGTGGAATGCTCGATCAGCATTT
Done.