Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01558.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2643
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33


Found at i:44 original size:2 final size:2

Alignment explanation


    Indices: 37--66  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

         27 ACTTTGTTCC

                                    *                   
         37 CT CT CT CT CT CT CT CT TT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

         67 GACTTTCTCT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53


Consensus pattern (2 bp):   
CT

Found at i:60 original size:18 final size:18

Alignment explanation


    Indices: 37--76  Score: 62
    Period size: 18  Copynumber: 2.2  Consensus size: 18

         27 ACTTTGTTCC

                         *    
         37 CTCTCTCTCTCTCTCTTT
          1 CTCTCTCTCTCTCACTTT

                        *     
         55 CTCTCTCTCTCTGACTTT
          1 CTCTCTCTCTCTCACTTT

                
         73 CTCT
          1 CTCT

         77 TTTTCCTCCC


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.03, C:0.42, G:0.03, T:0.53


Consensus pattern (18 bp):   
CTCTCTCTCTCTCACTTT

Done.