Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga03g01560.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 842
Length: 1404
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Found at i:959 original size:155 final size:155
Alignment explanation
Indices: 677--980 Score: 590
Period size: 155 Copynumber: 2.0 Consensus size: 155
667 GGGTTGCAAG
677 AATGGTCATGATGAGAATCGAATTCATAGCAATTGTTTCATTTTCATATGTATATCTTAATGGTT
1 AATGGTCATGATGAGAATCGAATTCATAGCAATTGTTTCATTTTCATATGTATATCTTAATGGTT
742 TAATCCGTAATTCACAAGTAAGTAGAGTTTCTTTTGGGTTGAAATGGTTGCTCAACAAACATGAA
66 TAATCCGTAATTCACAAGTAAGTAGAGTTTCTTTTGGGTTGAAATGGTTGCTCAACAAACATGAA
807 GTGAAGCATAAGATTGTCAGAACGT
131 GTGAAGCATAAGATTGTCAGAACGT
* *
832 AATGGTCATGATGAGAATCGAATTCATAGCAATTGTTTCTTTTTCATATGTATATCTTCATGGTT
1 AATGGTCATGATGAGAATCGAATTCATAGCAATTGTTTCATTTTCATATGTATATCTTAATGGTT
897 TAATCCGTAATTCACAAGTAAGTAGAGTTTCTTTTGGGTTGAAATGGTTGCTCAACAAACATGAA
66 TAATCCGTAATTCACAAGTAAGTAGAGTTTCTTTTGGGTTGAAATGGTTGCTCAACAAACATGAA
962 GTGAAGCATAAGATTGTCA
131 GTGAAGCATAAGATTGTCA
981 CAACTTACCA
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
155 147 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (155 bp):
AATGGTCATGATGAGAATCGAATTCATAGCAATTGTTTCATTTTCATATGTATATCTTAATGGTT
TAATCCGTAATTCACAAGTAAGTAGAGTTTCTTTTGGGTTGAAATGGTTGCTCAACAAACATGAA
GTGAAGCATAAGATTGTCAGAACGT
Done.