Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga03g01560.P1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1932
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Found at i:1487 original size:155 final size:155
Alignment explanation
Indices: 1205--1508 Score: 590
Period size: 155 Copynumber: 2.0 Consensus size: 155
1195 GGGTTGCAAG
1205 AATGGTCATGATGAGAATCGAATTCATAGCAATTGTTTCATTTTCATATGTATATCTTAATGGTT
1 AATGGTCATGATGAGAATCGAATTCATAGCAATTGTTTCATTTTCATATGTATATCTTAATGGTT
1270 TAATCCGTAATTCACAAGTAAGTAGAGTTTCTTTTGGGTTGAAATGGTTGCTCAACAAACATGAA
66 TAATCCGTAATTCACAAGTAAGTAGAGTTTCTTTTGGGTTGAAATGGTTGCTCAACAAACATGAA
1335 GTGAAGCATAAGATTGTCAGAACGT
131 GTGAAGCATAAGATTGTCAGAACGT
* *
1360 AATGGTCATGATGAGAATCGAATTCATAGCAATTGTTTCTTTTTCATATGTATATCTTCATGGTT
1 AATGGTCATGATGAGAATCGAATTCATAGCAATTGTTTCATTTTCATATGTATATCTTAATGGTT
1425 TAATCCGTAATTCACAAGTAAGTAGAGTTTCTTTTGGGTTGAAATGGTTGCTCAACAAACATGAA
66 TAATCCGTAATTCACAAGTAAGTAGAGTTTCTTTTGGGTTGAAATGGTTGCTCAACAAACATGAA
1490 GTGAAGCATAAGATTGTCA
131 GTGAAGCATAAGATTGTCA
1509 CAACTTACCA
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
155 147 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (155 bp):
AATGGTCATGATGAGAATCGAATTCATAGCAATTGTTTCATTTTCATATGTATATCTTAATGGTT
TAATCCGTAATTCACAAGTAAGTAGAGTTTCTTTTGGGTTGAAATGGTTGCTCAACAAACATGAA
GTGAAGCATAAGATTGTCAGAACGT
Done.