Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00639.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2489
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31


Found at i:1884 original size:20 final size:20

Alignment explanation


    Indices: 1836--1903  Score: 66
    Period size: 20  Copynumber: 3.2  Consensus size: 20

       1826 TTCTTACATT

                       *         
       1836 GTAAATCATTAAAAATATTGG
          1 GTAAATCATTAGAAATATT-G

                                   
       1857 TAGTAAAT-AGTTAGAAATATTG
          1 --GTAAATCA-TTAGAAATATTG

                         *  *   
       1879 GTAAATCATTAGATATTTTG
          1 GTAAATCATTAGAAATATTG

                 
       1899 GTAAA
          1 GTAAA

       1904 AGCTTTTCCT


Statistics
Matches: 40,  Mismatches: 3, Indels: 7
        0.80            0.06        0.14

Matches are distributed among these distances:
  20   21  0.52
  21    1  0.03
  22    2  0.05
  23   16  0.40

ACGTcount: A:0.44, C:0.03, G:0.16, T:0.37


Consensus pattern (20 bp):   
GTAAATCATTAGAAATATTG
Done.