Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01598.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4155
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32


Found at i:3760 original size:26 final size:26

Alignment explanation


    Indices: 3731--3792  Score: 97
    Period size: 26  Copynumber: 2.4  Consensus size: 26

       3721 AACTAATAAT

                                  *   
       3731 AAAAACTAATTTTAAATTAAGCTTTA
          1 AAAAACTAATTTTAAATTAAGCATTA

                                      
       3757 AAAAACTAATTTTAAATTAAGCATTA
          1 AAAAACTAATTTTAAATTAAGCATTA

            **        
       3783 TTAAACTAAT
          1 AAAAACTAAT

       3793 AATTTTTAAA


Statistics
Matches: 33,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  26   33  1.00

ACGTcount: A:0.52, C:0.08, G:0.03, T:0.37


Consensus pattern (26 bp):   
AAAAACTAATTTTAAATTAAGCATTA
Done.