Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01607.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2305
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27


Found at i:21 original size:2 final size:2

Alignment explanation


    Indices: 14--50  Score: 65
    Period size: 2  Copynumber: 18.5  Consensus size: 2

          4 GTAAGGCAGT

                               *                                   
         14 GA GA GA GA GA GA GC GA GA GA GA GA GA GA GA GA GA GA G
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G

         51 TTGGTTTATG


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.46, C:0.03, G:0.51, T:0.00


Consensus pattern (2 bp):   
GA

Done.