Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01608.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1077
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.36


Found at i:713 original size:25 final size:25

Alignment explanation


    Indices: 638--705  Score: 109
    Period size: 25  Copynumber: 2.7  Consensus size: 25

        628 TCCGCATCGT

                    *  *             
        638 CGTCGGCAGCCTTCTGCTACATCTC
          1 CGTCGGCATCCCTCTGCTACATCTC

               *                     
        663 CGTTGGCATCCCTCTGCTACATCTC
          1 CGTCGGCATCCCTCTGCTACATCTC

                              
        688 CGTCGGCATCCCTCTGCT
          1 CGTCGGCATCCCTCTGCT

        706 GCTTCTCCAG


Statistics
Matches: 39,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  25   39  1.00

ACGTcount: A:0.10, C:0.41, G:0.19, T:0.29


Consensus pattern (25 bp):   
CGTCGGCATCCCTCTGCTACATCTC
Done.