Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01614.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8493
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:5565 original size:55 final size:55

Alignment explanation


    Indices: 5500--5610  Score: 222
    Period size: 55  Copynumber: 2.0  Consensus size: 55

       5490 AGACCAAGTG

                                                                   
       5500 ATATTACTACCATTCCTATGTGGTAGATATTATGATGCCATCAGTAGATAAAAGC
          1 ATATTACTACCATTCCTATGTGGTAGATATTATGATGCCATCAGTAGATAAAAGC

                                                                   
       5555 ATATTACTACCATTCCTATGTGGTAGATATTATGATGCCATCAGTAGATAAAAGC
          1 ATATTACTACCATTCCTATGTGGTAGATATTATGATGCCATCAGTAGATAAAAGC

             
       5610 A
          1 A

       5611 ATCTTCACAA


Statistics
Matches: 56,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  55   56  1.00

ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32


Consensus pattern (55 bp):   
ATATTACTACCATTCCTATGTGGTAGATATTATGATGCCATCAGTAGATAAAAGC
Done.