Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01620.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3046
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29


Found at i:2463 original size:10 final size:10

Alignment explanation


    Indices: 2448--2472  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

       2438 CTCATGCATA

                      
       2448 ACTTGTTTTG
          1 ACTTGTTTTG

                      
       2458 ACTTGTTTTG
          1 ACTTGTTTTG

                 
       2468 ACTTG
          1 ACTTG

       2473 GAGACTAGAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.12, C:0.12, G:0.20, T:0.56


Consensus pattern (10 bp):   
ACTTGTTTTG
Done.