Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00058.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1285
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:1165 original size:22 final size:21

Alignment explanation


    Indices: 1123--1167  Score: 56
    Period size: 22  Copynumber: 2.1  Consensus size: 21

       1113 CTTCGAGATA

                            *    
       1123 CTAGTTTAGTCTCGATTTATT
          1 CTAGTTTAGTCTCGATATATT

                                   
       1144 CTAGTTTAAGTC-CAGATATATT
          1 CTAGTTT-AGTCTC-GATATATT

              
       1166 CT
          1 CT

       1168 GATTTTCAAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  21    8  0.38
  22   13  0.62

ACGTcount: A:0.24, C:0.16, G:0.13, T:0.47


Consensus pattern (21 bp):   
CTAGTTTAGTCTCGATATATT
Done.