Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00647.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 586

Length: 977
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32


Found at i:775 original size:22 final size:22

Alignment explanation


    Indices: 732--775  Score: 52
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        722 TTGGGCTCCT

                         * * *    
        732 GGTTTGGGTCAAATTGGGATTA
          1 GGTTTGGGTCAAAATCGAATTA

                     *            
        754 GGTTTGGGTTAAAATCGAATTA
          1 GGTTTGGGTCAAAATCGAATTA

        776 AGGGATTTGG


Statistics
Matches: 18,  Mismatches: 4, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.27, C:0.05, G:0.32, T:0.36


Consensus pattern (22 bp):   
GGTTTGGGTCAAAATCGAATTA
Done.