Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01622.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2378
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33


Found at i:497 original size:15 final size:15

Alignment explanation


    Indices: 477--506  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        467 CTTAGAGCCG

                           
        477 ATGTTTGTTTTTCCT
          1 ATGTTTGTTTTTCCT

                           
        492 ATGTTTGTTTTTCCT
          1 ATGTTTGTTTTTCCT

        507 TTTCAAATGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.07, C:0.13, G:0.13, T:0.67


Consensus pattern (15 bp):   
ATGTTTGTTTTTCCT
Done.