Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00648.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 712

Length: 1187
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28


Found at i:1125 original size:14 final size:14

Alignment explanation


    Indices: 1089--1130  Score: 50
    Period size: 14  Copynumber: 2.9  Consensus size: 14

       1079 AGAATACGTG

                           
       1089 TATA-ATATATGAAA
          1 TATATATATAT-AAA

                         * 
       1103 TATGATATATATATA
          1 TAT-ATATATATAAA

                         
       1118 TATATATATATAA
          1 TATATATATATAA

       1131 CATAGGATAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 4
        0.80            0.07        0.13

Matches are distributed among these distances:
  14   12  0.50
  15    6  0.25
  16    6  0.25

ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43


Consensus pattern (14 bp):   
TATATATATATAAA
Done.