Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01643.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1971
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28


Found at i:66 original size:26 final size:27

Alignment explanation


    Indices: 20--76  Score: 64
    Period size: 26  Copynumber: 2.1  Consensus size: 27

         10 AGCACAAGCT

                            *          
         20 TCACTTCTCTGTCTTTGTCTCTCTTTA
          1 TCACTTCTCTGTCTTTATCTCTCTTTA

                                   *   *
         47 TCAC-TCTCTGT-TCTTATCTCTGTTTC
          1 TCACTTCTCTGTCT-TTATCTCTCTTTA

                
         73 TCAC
          1 TCAC

         77 CTTGAGAAAC


Statistics
Matches: 26,  Mismatches: 3, Indels: 3
        0.81            0.09        0.09

Matches are distributed among these distances:
  25    1  0.04
  26   21  0.81
  27    4  0.15

ACGTcount: A:0.09, C:0.32, G:0.07, T:0.53


Consensus pattern (27 bp):   
TCACTTCTCTGTCTTTATCTCTCTTTA
Done.